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Last updated: 2025-05-23

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Knit directory: CosMx_pipeline_LGA/

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Repository version: 51b3104

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File	Version	Author	Date	Message
html	51b3104	lidiaga	2025-05-23	Build site.
Rmd	510334a	lidiaga	2025-05-23	Fix grammatical and format errors in web and README
html	8a9f079	lidiaga	2025-05-20	Build site.
Rmd	cf77662	lidiaga	2025-05-19	Edit website files
Rmd	0065eb1	lidiaga	2025-05-17	Start workflowr project.

Welcome to my Master’s thesis webpage! 😀

My name is Lidia Getino Álvarez and this webpage summarizes the final project of my Master’s in Bioinformatics and Biostatistics at Universitat Oberta de Catalunya: “Implementation of a bioinformatics pipeline for the analysis of spatial transcriptomics data”.

University: Universitat Oberta de Catalunya

Tutor: Mireia Ferrer Almirall

Developed at: Statistics and Bioinformatics Unit (Vall d’Hebron Research Institute - VHIR)

Date: 04-06-2025

The main goal of my project was to construct a well documented and reproducible pipeline for the analysis of spatial transcriptomic data, specifically from the CosMx™ SMI technology by Nanostring® Technologies.

This website, and its corresponding GitHub repository, serves the purpose of transparently sharing all the code and results of my work. Here you will find:

Hopefully, soon my thesis document will be available too, as reference for a more profound insight on my work. For now, I hope what you find here is useful and interesting!

A workflowr project.